Information borrowing from historical data is gaining attention in clinical trials of rare and pediatric diseases, where statistical power may be insufficient for confirmation of efficacy if the sample size is small. Although Bayesian information borrowing methods are well established, test-then-pool and equivalence-based test-then-pool methods have recently been proposed as frequentist methods to determine whether historical data should be used for statistical hypothesis testing. Depending on the results of the hypothesis testing, historical data may not be usable. This paper proposes a dynamic borrowing method for historical information based on the similarity between current and historical data. In our proposed method of dynamic information borrowing, as in Bayesian dynamic borrowing, the amount of borrowing ranges from 0% to 100%. We propose two methods using the density function of the t-distribution and a logistic function as a similarity measure. We evaluate the performance of the proposed methods through Monte Carlo simulations. We demonstrate the usefulness of borrowing information by reanalyzing actual clinical trial data.
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Analysis of high-dimensional data, where the number of covariates is larger than the sample size, is a topic of current interest. In such settings, an important goal is to estimate the signal level $\tau^2$ and noise level $\sigma^2$, i.e., to quantify how much variation in the response variable can be explained by the covariates, versus how much of the variation is left unexplained. This thesis considers the estimation of these quantities in a semi-supervised setting, where for many observations only the vector of covariates $X$ is given with no responses $Y$. Our main research question is: how can one use the unlabeled data to better estimate $\tau^2$ and $\sigma^2$? We consider two frameworks: a linear regression model and a linear projection model in which linearity is not assumed. In the first framework, while linear regression is used, no sparsity assumptions on the coefficients are made. In the second framework, the linearity assumption is also relaxed and we aim to estimate the signal and noise levels defined by the linear projection. We first propose a naive estimator which is unbiased and consistent, under some assumptions, in both frameworks. We then show how the naive estimator can be improved by using zero-estimators, where a zero-estimator is a statistic arising from the unlabeled data, whose expected value is zero. In the first framework, we calculate the optimal zero-estimator improvement and discuss ways to approximate the optimal improvement. In the second framework, such optimality does no longer hold and we suggest two zero-estimators that improve the naive estimator although not necessarily optimally. Furthermore, we show that our approach reduces the variance for general initial estimators and we present an algorithm that potentially improves any initial estimator. Lastly, we consider four datasets and study the performance of our suggested methods.
The role of cryptocurrencies within the financial systems has been expanding rapidly in recent years among investors and institutions. It is therefore crucial to investigate the phenomena and develop statistical methods able to capture their interrelationships, the links with other global systems, and, at the same time, the serial heterogeneity. For these reasons, this paper introduces hidden Markov regression models for jointly estimating quantiles and expectiles of cryptocurrency returns using regime-switching copulas. The proposed approach allows us to focus on extreme returns and describe their temporal evolution by introducing time-dependent coefficients evolving according to a latent Markov chain. Moreover to model their time-varying dependence structure, we consider elliptical copula functions defined by state-specific parameters. Maximum likelihood estimates are obtained via an Expectation-Maximization algorithm. The empirical analysis investigates the relationship between daily returns of five cryptocurrencies and major world market indices.
Despite the progress in medical data collection the actual burden of SARS-CoV-2 remains unknown due to under-ascertainment of cases. This was apparent in the acute phase of the pandemic and the use of reported deaths has been pointed out as a more reliable source of information, likely less prone to under-reporting. Since daily deaths occur from past infections weighted by their probability of death, one may infer the total number of infections accounting for their age distribution, using the data on reported deaths. We adopt this framework and assume that the dynamics generating the total number of infections can be described by a continuous time transmission model expressed through a system of non-linear ordinary differential equations where the transmission rate is modelled as a diffusion process allowing to reveal both the effect of control strategies and the changes in individuals behavior. We develop this flexible Bayesian tool in Stan and study 3 pairs of European countries, estimating the time-varying reproduction number($R_t$) as well as the true cumulative number of infected individuals. As we estimate the true number of infections we offer a more accurate estimate of $R_t$. We also provide an estimate of the daily reporting ratio and discuss the effects of changes in mobility and testing on the inferred quantities.
We investigate the mechanism design problem faced by a principal who hires \emph{multiple} agents to gather and report costly information. Then, the principal exploits the information to make an informed decision. We model this problem as a game, where the principal announces a mechanism consisting in action recommendations and a payment function, a.k.a. scoring rule. Then, each agent chooses an effort level and receives partial information about an underlying state of nature based on the effort. Finally, the agents report the information (possibly non-truthfully), the principal takes a decision based on this information, and the agents are paid according to the scoring rule. While previous work focuses on single-agent problems, we consider multi-agents settings. This poses the challenge of coordinating the agents' efforts and aggregating correlated information. Indeed, we show that optimal mechanisms must correlate agents' efforts, which introduces externalities among the agents, and hence complex incentive compatibility constraints and equilibrium selection problems. First, we design a polynomial-time algorithm to find an optimal incentive compatible mechanism. Then, we study an online problem, where the principal repeatedly interacts with a group of unknown agents. We design a no-regret algorithm that provides $\widetilde{\mathcal{O}}(T^{2/3})$ regret with respect to an optimal mechanism, matching the state-of-the-art bound for single-agent settings.
A dynamic mean field theory is developed for finite state and action Bayesian reinforcement learning in the large state space limit. In an analogy with statistical physics, the Bellman equation is studied as a disordered dynamical system; the Markov decision process transition probabilities are interpreted as couplings and the value functions as deterministic spins that evolve dynamically. Thus, the mean-rewards and transition probabilities are considered to be quenched random variables. The theory reveals that, under certain assumptions, the state-action values are statistically independent across state-action pairs in the asymptotic state space limit, and provides the form of the distribution exactly. The results hold in the finite and discounted infinite horizon settings, for both value iteration and policy evaluation. The state-action value statistics can be computed from a set of mean field equations, which we call dynamic mean field programming (DMFP). For policy evaluation the equations are exact. For value iteration, approximate equations are obtained by appealing to extreme value theory or bounds. The result provides analytic insight into the statistical structure of tabular reinforcement learning, for example revealing the conditions under which reinforcement learning is equivalent to a set of independent multi-armed bandit problems.
Improving Segmentation and Detection of Lesions in CT Scans Using Intensity Distribution Supervision
We propose a method to incorporate the intensity information of a target lesion on CT scans in training segmentation and detection networks. We first build an intensity-based lesion probability (ILP) function from an intensity histogram of the target lesion. It is used to compute the probability of being the lesion for each voxel based on its intensity. Finally, the computed ILP map of each input CT scan is provided as additional supervision for network training, which aims to inform the network about possible lesion locations in terms of intensity values at no additional labeling cost. The method was applied to improve the segmentation of three different lesion types, namely, small bowel carcinoid tumor, kidney tumor, and lung nodule. The effectiveness of the proposed method on a detection task was also investigated. We observed improvements of 41.3% -> 47.8%, 74.2% -> 76.0%, and 26.4% -> 32.7% in segmenting small bowel carcinoid tumor, kidney tumor, and lung nodule, respectively, in terms of per case Dice scores. An improvement of 64.6% -> 75.5% was achieved in detecting kidney tumors in terms of average precision. The results of different usages of the ILP map and the effect of varied amount of training data are also presented.
Over the past decades, discrete dislocation dynamics simulations have been shown to reliably predict the evolution of dislocation microstructures for micrometer-sized metallic samples. Such simulations provide insight into the governing deformation mechanisms and the interplay between different physical phenomena such as dislocation reactions or cross-slip. This work is focused on a detailed analysis of the influence of the cross-slip on the evolution of dislocation systems. A tailored data mining strategy using the ``\ab*{discrete-to-continuous} framework'' allows to quantify differences and to quantitatively compare dislocation structures. We analyze the quantitative effects of the cross-slip on the microstructure in the course of a tensile test and a subsequent relaxation to present the role of cross-slip in the microstructure evolution. The precision of the extracted quantitative information using D2C strongly depends on the resolution of the domain averaging. We also analyze how the resolution of the averaging influences the distribution of total dislocation density and curvature fields of the specimen. Our analyzes are important approaches for interpreting the resulting structures calculated by dislocation dynamics simulations.
Applications of the ensemble Kalman filter to high-dimensional problems are feasible only with small ensembles. This necessitates a kind of regularization of the analysis (observation update) problem. We propose a regularization technique based on a new non-stationary, non-parametric spatial model on the sphere. The model termed the Locally Stationary Convolution Model is a constrained version of the general Gaussian process convolution model. The constraints on the location-dependent convolution kernel include local isotropy, positive definiteness as a function of distance, and smoothness as a function of location. The model allows for a rigorous definition of the local spectrum, which is required to be a smooth function of spatial wavenumber. We propose and test an ensemble filter in which prior covariances are postulated to obey the Locally Stationary Convolution Model. The model is estimated online in a two-stage procedure. First, ensemble perturbations are bandpass filtered in several wavenumber bands to extract aggregated local spatial spectra. Second, a neural network recovers the local spectra from sample variances of the filtered fields. In simulation experiments, the new filter was capable of outperforming several existing techniques. With small to moderate ensemble sizes, the improvement was substantial.
The state of the art related to parameter correlation in two-parameter models has been reviewed in this paper. The apparent contradictions between the different authors regarding the ability of D--optimality to simultaneously reduce the correlation and the area of the confidence ellipse in two-parameter models were analyzed. Two main approaches were found: 1) those who consider that the optimality criteria simultaneously control the precision and correlation of the parameter estimators; and 2) those that consider a combination of criteria to achieve the same objective. An analytical criterion combining in its structure both the optimality of the precision of the estimators of the parameters and the reduction of the correlation between their estimators is provided. The criterion was tested both in a simple linear regression model, considering all possible design spaces, and in a non-linear model with strong correlation of the estimators of the parameters (Michaelis--Menten) to show its performance. This criterion showed a superior behavior to all the strategies and criteria to control at the same time the precision and the correlation.
Many tasks in natural language processing can be viewed as multi-label classification problems. However, most of the existing models are trained with the standard cross-entropy loss function and use a fixed prediction policy (e.g., a threshold of 0.5) for all the labels, which completely ignores the complexity and dependencies among different labels. In this paper, we propose a meta-learning method to capture these complex label dependencies. More specifically, our method utilizes a meta-learner to jointly learn the training policies and prediction policies for different labels. The training policies are then used to train the classifier with the cross-entropy loss function, and the prediction policies are further implemented for prediction. Experimental results on fine-grained entity typing and text classification demonstrate that our proposed method can obtain more accurate multi-label classification results.
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